Assembly Scaling Bottlenecks

Currently SPAdes assembler is among the top choices for processing bacterial datasets. Now we would like to move to much larger genomes. Project’s goal is the analysis of bottlenecks and development of non-trivial data structures and parallelization tricks to scale by three orders of magnitude.

   Татьяна Малыгина
   Сергей Нурк
Время выполнения проекта: Feb 2014 — May 2014