Projects

Ongoing projects

  1. GeneQuery - a webserver for transcriptome-based hypothesis generation.
  2. ClusDec - an R package to perform de novo deconvolution of transcriptomic experiments in absence of reference gene signatures or cell type/count knowledge.
  3. BroadPeaks - re-implementation of SICER algorithm for broad peak calling in appropriate ChIP-Seq experiments. 

Active collaborations

  1. Washington University in St Louis, Maxim Artyomov laboratory  
  2. Yale University, Vishwa Deep Dixit laboratory 
  3. IFMO,  Genome Assembly Algorithms Laboratory 
  4. Federal Almazov North-West Medical Research Centre
  5. Institute of Cytology of RAS (SPb), Dmitry Tentler laboratory